李军
职务：助理教授
邮箱：lijun@gbu.edu.cn
主页：https://scholar.google.com/citations?user=kWD4n-AAAAAJ&hl=en
研究方向
uRNA结构预测 u生物物理
u生物信息学 u机器学习
主要成果
u目前以第一作者或共同第一作者在Nucleic Acids Research、Journal of Chemical Theory and Computation 等核心期刊发表学术论文10余篇；
u作为核心参与人参加第15届全球性的结构预测比赛CASP，获得第二名。
学习经历
u2011.09?2018.12 南京大学 物理学 理学博士
u2007.09?2011.06 南京大学 物理学 理学学士
工作经历
u2024.08?至今 大湾区大学（筹） 助理教授
u2018.12?2023.11 美国密苏里大学 博士后
代表性论文
1. Li J, Chen SJ. RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling. Nucleic Acids Research. 2023; 51(7):3341-56.
2. Li J, Zhu W, Wang J, Li W, Gong S, Zhang J, Wang W. RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks. PLoS Computational Biology. 2018; 14(11):e1006514
3. Li J, Zhang J, Wang J, Li W, Wang W. Structure prediction of RNA loops with a probabilistic approach. PLoS Computational Biology. 2016; 12(8):e1005032.
4．Li J, Zhang S, Zhang D, Chen SJ. Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences. Bioinformatics. 2022; 38(16):4042-3.
5. Li J, Chen SJ. RNA 3D structure prediction using coarse-grained models. Frontiers in Molecular Biosciences. 2021; 8:720937.
6. Li J, Zhang S, Chen SJ. Advancing RNA 3D structure prediction: Exploring hierarchical and hybrid approaches in CASP15. Proteins: Structure, Function, and Bioinformatics. 2023.
7. Li J, Walter, G. Nils, Chen SJ. smFRET-assisted RNA structure prediction. Communications in Information and Systems. 2024; Accepted, in press.
8. Li J, Chen SJ. Embracing exascale computing in nucleic acid simulations. Current Opinion in Structural Biology. 2024; 87:102847.
9. Zhang D*, Li J*, Chen SJ. IsRNA1: de novo prediction and blind screening of RNA 3D structures. Journal of Chemical Theory and Computation. 2021; 17(3):1842-57.
10. Zhang S*, Li J*, Chen SJ. Machine learning in RNA structure prediction: advances and challenges. Biophysical Journal. 2024.
11. Wang YZ*, Li J*, Zhang S, Huang B, Yao G, Zhang J. An RNA scoring function for tertiary structure prediction based on multi-layer neural networks. Molecular Biology. 2019; 53(1):118-26.
12. Zhou Y, Li J, Hurst T, Chen SJ. SHAPER: A web server for fast and accurate SHAPE reactivity prediction. Frontiers in Molecular Biosciences. 2021; 8:721955.
13. Gumna J, Antczak M, Adamiak RW, Bujnicki JM, Chen SJ, Ding F, Ghosh P, Li J, Mukherjee S, Nithin C, Pachulska-Wieczorek K. Computational pipeline for reference-free comparative analysis of RNA 3D structures applied to SARS-CoV-2 UTR models. International Journal of Molecular Sciences. 2022; 23(17):9630.
14. Samuelian JS, Gremminger TJ, Song Z, Poudyal RR, Li J, Zhou Y, Staller SA, Carballo JA, Roychowdhury-Saha M, Chen SJ, Burke DH. An RNA aptamer that shifts the reduction potential of metabolic cofactors. Nature Chemical Biology. 2022; 18(11):1263-9.
15. Song Z, Gremminger T, Singh G, Cheng Y, Li J, Qiu L, Ji J, Lange MJ, Zuo X, Chen SJ, Zou X. The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity. Nucleic Acids Research. 2021; 49(10):5925-42.
